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aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
Date: 1 August 2024 PMID: PMC11293182 Category: N/A Authors: Jia Li, Yu Shyr, Qi Liu Abstract: Typical clustering methods for...
bgtaylor1
Nov 22, 20241 min read
Natural History of Colorectal Polyps Undergoing Longitudinal in Vivo CT Colonography Surveillance
Date: January 2024 PMID: PMC10831482 Category: N/A Authors: B Dustin Pooler, David H Kim, Kristina A Matkowskyj, Michael A Newton,...
bgtaylor1
Nov 22, 20242 min read
Mapping the core senescence phenotype of primary human colon fibroblasts
Date: 21 February 2024 PMID: PMC10929841 Category: N/A Authors: Namita Ganesh Hattangady, Kelly Carter, Brett Maroni-Rana, Ting Wang,...
bgtaylor1
Nov 22, 20242 min read
Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Date: 15 April 2022 PMID: PMC9022358 Category: N/A Authors: Julia Matas, Brendan Kohrn, Jeanne Fredrickson, Kelly Carter, Ming Yu, Ting...
bgtaylor1
Nov 22, 20242 min read
Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph
Date: 17 October 2023 PMID: PMC10614787 Category: N/A Authors: Jia Li, Yu Shyr, Qi Liu Abstract: Single-cell and spatial...
bgtaylor1
Nov 22, 20241 min read
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles
Date: 30 June 2023 PMID: PMC10340377 Category: N/A Authors: Jing Wang, Hua-Chang Chen, Quanhu Sheng, T Renee Dawson, Robert J Coffey,...
bgtaylor1
Nov 22, 20242 min read
mxfda: a comprehensive toolkit for functional data analysis of single-cell spatial data
Date: 13 November 2024 PMID: 39552929 Category: N/A Authors: Julia Wrobel, Alex C Soupir, Mitchell T Hayes, Lauren C Peres, Thao Vu,...
bgtaylor1
Nov 22, 20241 min read
scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos
Date: 19 August 2023 PMID: PMC10469060 Category: N/A Authors: Li-Ching Huang, Lindsey K Stolze, Hua-Chang Chen, Alexander Gelbard, Yu...
bgtaylor1
Nov 22, 20241 min read
Elevated EVL Methylation Level in the Normal Colon Mucosa Is a Potential Risk Biomarker for Developing Recurrent Adenomas
Date: 1 September 2023 PMID: PMC10529338 Category: N/A Authors: Ming Yu, Kelly T Carter, Kelsey K Baker, Mary W Redman, Ting Wang, Kathy...
bgtaylor1
Nov 22, 20242 min read
A contamination focused approach for optimizing the single-cell RNA-seq experiment
Date: 29 June 2023 PMID: PMC10366499 Category: N/A Authors: Deronisha Arceneaux, Zhengyi Chen, Alan J Simmons, Cody N Heiser, Austin N...
bgtaylor1
Nov 22, 20242 min read
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
Date: 5 November 2023 PMID: PMC10516032 Category: N/A Authors: Jeanette A I Johnson, Genevieve L Stein-O'Brien, Max Booth, Randy Heiland,...
bgtaylor1
Nov 22, 20242 min read
Regional analysis to delineate intrasample heterogeneity with RegionalST
Date: 24 March 2024 PMID: PMC11026142 Category: N/A Authors: Yue Lyu, Chong Wu, Wei Sun, Ziyi Li Abstract: Motivation: Spatial...
bgtaylor1
Nov 22, 20242 min read
Temporal recording of mammalian development and precancer
Date: 6 October 2024 PMID: PMC11525190 Category: N/A Authors: Mirazul Islam, Yilin Yang, Alan J Simmons, Vishal M Shah, Krushna Pavan...
bgtaylor1
Nov 22, 20242 min read
Comparison of Multiple Segmentation Methods for Volumetric Delineation of Primary Prostate Cancer with Prostate-Specific Membrane Antigen-Targeted 18F-DCFPyL PET/CT
Date: 2 January 2024 PMID: PMC10755517 Category: N/A Authors: Felicia Wang, Chen Liu, Igor Vidal, Margarita Mana-Ay, Andrew F Voter,...
bgtaylor1
Nov 22, 20242 min read
Comparison of Multiple Segmentation Methods for Volumetric Delineation of Primary Prostate Cancer with Prostate-Specific Membrane Antigen-Targeted 18F-DCFPyL PET/CT
Date: 2 January 2024 PMID: PMC10755517 Category: N/A Authors: Felicia Wang, Chen Liu, Igor Vidal, Margarita Mana-Ay, Andrew F Voter,...
bgtaylor1
Nov 22, 20242 min read
Scalable and model-free detection of spatial patterns and colocalization
Date: September 2022 PMID: PMC9528978 Category: N/A Authors: Qi Liu, Chih-Yuan Hsu, Yu Shyr Abstract: The expeditious growth in...
bgtaylor1
Nov 22, 20241 min read
RET is a sex-biased regulator of intestinal tumorigenesis
Date: 16 January 2024 PMID: PMC11326521 Category: N/A Authors: Sean T Koester, Naisi Li, Neelendu Dey Abstract: Ret is implicated...
bgtaylor1
Nov 22, 20242 min read
scKWARN: Kernel-weighted-average robust normalization for single-cell RNA-seq data
Date: 1 February 2024 PMID: PMC10868328 Category: N/A Authors: Chih-Yuan Hsu, Chia-Jung Chang, Qi Liu, Yu Shyr Abstract: Motivation:...
bgtaylor1
Nov 22, 20242 min read
Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change
Date: 9 October 2024 PMID: PMC11464690 Category: N/A Authors: Samuel S Minot, Naisi Li, Harini Srinivasan, Jessica L Ayers, Ming Yu, Sean...
bgtaylor1
Nov 22, 20242 min read
Advances in Mapping Tumor Progression from Precancer Atlases
Date: 1 August 2023 PMID: PMC10523872 Category: N/A Authors: Zhengyi Chen, Ken S Lau Abstract: Tissue profiling technologies present...
bgtaylor1
Nov 22, 20241 min read
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