3D genomic mapping reveals multifocality of human pancreatic precancers

VICTOR: Validation and inspection of cell type annotation through optimal regression

3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure

Chromogenic detection of telomere lengths in situ aids the identification of precancerous lesions in the prostate

Temporally discordant chromatin accessibility and DNA demethylation define short and long-term enhancer regulation during cell fate specification

Phosphodiesterase-5 inhibition collaborates with vaccine-based immunotherapy to reprogram myeloid cells in pancreatic ductal adenocarcinoma

PoweREST: Statistical Power Estimation for Spatial Transcriptomics Experiments to Detect Differentially Expressed Genes Between Two Conditions

Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology (MILWRM)

Accurate identification of locally aneuploid cells by incorporating cytogenetic information in single cell data analysis

EVPsort: An Atlas of Small ncRNA Profiling and Sorting in Extracellular Vesicles and Particles

Progressive Spreading of DNA Methylation in the GSTP1 Promoter CpG Island across Transitions from Precursors to Invasive Prostate Cancer

A distribution-free and analytic method for power and sample size calculation in single-cell differential expression

FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing

aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph

Natural History of Colorectal Polyps Undergoing Longitudinal in Vivo CT Colonography Surveillance

Mapping the core senescence phenotype of primary human colon fibroblasts

Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon

Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph

Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles

mxfda: a comprehensive toolkit for functional data analysis of single-cell spatial data