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bgtaylor1
Nov 22, 20242 min read
3D genomic mapping reveals multifocality of human pancreatic precancers
Date: May 2024 PMID: 38693266 Category: N/A Authors: Alicia M Braxton, Ashley L Kiemen, Mia P Grahn, André Forjaz, Jeeun Parksong, Jaanvi...
14 views0 comments


bgtaylor1
Nov 22, 20241 min read
VICTOR: Validation and inspection of cell type annotation through optimal regression
Date: 2 September 2024 PMID: PMC11408377 Category: N/A Authors: Chia-Jung Chang, Chih-Yuan Hsu, Qi Liu, Yu Shyr Abstract: ...
5 views0 comments


bgtaylor1
Nov 22, 20242 min read
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure
Date: 6 August 2024 PMID: PMC11326156 Category: N/A Authors: Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz,...
6 views0 comments


bgtaylor1
Nov 22, 20242 min read
Chromogenic detection of telomere lengths in situ aids the identification of precancerous lesions in the prostate
Date: February 2024 PMID: PMC10843147 Category: N/A Authors: Onur Ertunc, Erica Smearman, Qizhi Zheng, Jessica L Hicks, Jacqueline A...
1 view0 comments


bgtaylor1
Nov 22, 20242 min read
Temporally discordant chromatin accessibility and DNA demethylation define short and long-term enhancer regulation during cell fate specification
Date: 27 August 24 PMID: PMC11383056 Category: N/A Authors: Lindsey N Guerin, Timothy J Scott, Jacqueline A Yap, Annelie Johansson, Fabio...
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bgtaylor1
Nov 22, 20242 min read
Phosphodiesterase-5 inhibition collaborates with vaccine-based immunotherapy to reprogram myeloid cells in pancreatic ductal adenocarcinoma
Date: 6 August 2024 PMID: PMC11457845 Category: N/A Authors: Nicole E Gross, Zhehao Zhang, Jacob T Mitchell, Soren Charmsaz, Alexei G...
2 views0 comments


bgtaylor1
Nov 22, 20242 min read
PoweREST: Statistical Power Estimation for Spatial Transcriptomics Experiments to Detect Differentially Expressed Genes Between Two Conditions
Date: 1 September 2024 PMID: PMC11384012 Category: N/A Authors: Lan Shui, Anirban Maitra, Ying Yuan, Ken Lau, Harsimran Kaur, Liang Li,...
5 views0 comments


bgtaylor1
Nov 22, 20242 min read
Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology (MILWRM)
Date: 30 October 2024 PMID: PMC11525554 Category: N/A Authors: Harsimran Kaur, Cody N Heiser, Eliot T McKinley, Lissa Ventura-Antunes,...
1 view0 comments


bgtaylor1
Nov 22, 20242 min read
Accurate identification of locally aneuploid cells by incorporating cytogenetic information in single cell data analysis
Date: 15 October 2024 PMID: N/A Category: N/A Authors: Ziyi Li, Ruoxing Li, Irene Ganan-Gomez, Hussein A. Abbas, Guillermo Garcia-Manero...
2 views0 comments


bgtaylor1
Nov 22, 20241 min read
EVPsort: An Atlas of Small ncRNA Profiling and Sorting in Extracellular Vesicles and Particles
Date: 1 September 2024 PMID: PMC11574917 Category: N/A Authors: Hua-Chang Chen, Jing Wang, Robert J Coffey, James G Patton, Alissa M...
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bgtaylor1
Nov 22, 20242 min read
Progressive Spreading of DNA Methylation in the GSTP1 Promoter CpG Island across Transitions from Precursors to Invasive Prostate Cancer
Date: 1 August 2023 PMID: PMC10529302 Category: N/A Authors: Harshath Gupta, Hitoshi Inoue, Yasutomo Nakai, Masashi Nakayama, Tracy...
1 view0 comments


bgtaylor1
Nov 22, 20242 min read
A distribution-free and analytic method for power and sample size calculation in single-cell differential expression
Date: 4 September 2024 PMID: N/A Category: N/A Authors: Chih-Yuan Hsu, Qi Liu, Yu Shyr Abstract: Motivation Differential expression...
1 view0 comments


bgtaylor1
Nov 22, 20241 min read
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing
Date: 22 January 2024 PMID: PMC10833567 Category: N/A Authors: Hua-Chang Chen, Jing Wang, Yu Shyr, Qi Liu Abstract: Adapter trimming...
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bgtaylor1
Nov 22, 20241 min read
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
Date: 1 August 2024 PMID: PMC11293182 Category: N/A Authors: Jia Li, Yu Shyr, Qi Liu Abstract: Typical clustering methods for...
1 view0 comments


bgtaylor1
Nov 22, 20242 min read
Natural History of Colorectal Polyps Undergoing Longitudinal in Vivo CT Colonography Surveillance
Date: January 2024 PMID: PMC10831482 Category: N/A Authors: B Dustin Pooler, David H Kim, Kristina A Matkowskyj, Michael A Newton,...
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bgtaylor1
Nov 22, 20242 min read
Mapping the core senescence phenotype of primary human colon fibroblasts
Date: 21 February 2024 PMID: PMC10929841 Category: N/A Authors: Namita Ganesh Hattangady, Kelly Carter, Brett Maroni-Rana, Ting Wang,...
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bgtaylor1
Nov 22, 20242 min read
Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Date: 15 April 2022 PMID: PMC9022358 Category: N/A Authors: Julia Matas, Brendan Kohrn, Jeanne Fredrickson, Kelly Carter, Ming Yu, Ting...
2 views0 comments


bgtaylor1
Nov 22, 20241 min read
Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph
Date: 17 October 2023 PMID: PMC10614787 Category: N/A Authors: Jia Li, Yu Shyr, Qi Liu Abstract: Single-cell and spatial...
3 views0 comments


bgtaylor1
Nov 22, 20242 min read
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles
Date: 30 June 2023 PMID: PMC10340377 Category: N/A Authors: Jing Wang, Hua-Chang Chen, Quanhu Sheng, T Renee Dawson, Robert J Coffey,...
0 views0 comments


bgtaylor1
Nov 22, 20241 min read
mxfda: a comprehensive toolkit for functional data analysis of single-cell spatial data
Date: 13 November 2024 PMID: 39552929 Category: N/A Authors: Julia Wrobel, Alex C Soupir, Mitchell T Hayes, Lauren C Peres, Thao Vu,...
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